Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKG-IEISNLLPEQRMQERGW
4ADU Chain:A ((12-284))
--------LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKV--------------
General information:
TITO was launched using:
RESULT:
Template:
4ADU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160903 for 2397 contacts (-67.1/contact) +
2D Compatibility (PS) -30333 + (NN) -19033 + (LL) 1552
1D Compatibility (HY) -29200 + (ID) 7850
Total energy: -245767.0 ( -102.53 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_4ADU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADU-query.scw
PDB file :
Tito_Scwrl_4ADU.pdb
: