Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPS-GEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
3K0T Chain:A ((23-142))
----ITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEG-IEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFSQPYPARAAIGVAALPRGAQVEMDAILVI-
General information:
TITO was launched using:
RESULT:
Template:
3K0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59255 for 890 contacts (-66.6/contact) +
2D Compatibility (PS) -12655 + (NN) -2670 + (LL) 456
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -88724.0 ( -99.69 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3K0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K0T-query.scw
PDB file :
Tito_Scwrl_3K0T.pdb
: