Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIEL-NQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
4FOT Chain:A ((6-189))
--LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPN-FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQINA--
General information:
TITO was launched using:
RESULT:
Template:
4FOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115227 for 1533 contacts (-75.2/contact) +
2D Compatibility (PS) -19343 + (NN) -4055 + (LL) 744
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -155531.0 ( -101.46 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4FOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FOT-query.scw
PDB file :
Tito_Scwrl_4FOT.pdb
: