Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITI-----------DEIEELSPDFLMISPGPCSPDEAG---ISLEAIKHF-AGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTS-------------------------DIEHDGK------TIFEGLKNPL--VATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA
4WIN Chain:A ((22-236))
--------------LVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTK---IPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNF----------
General information:
TITO was launched using:
RESULT:
Template:
4WIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80096 for 1311 contacts (-61.1/contact) +
2D Compatibility (PS) -17715 + (NN) -4385 + (LL) 2304
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -115892.0 ( -88.40 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_4WIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WIN-query.scw
PDB file :
Tito_Scwrl_4WIN.pdb
: