Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKYDSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVPISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYNDLLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPVLLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAMLNKGGVHHG
3TYA Chain:A ((34-295))
------------------LNLNEKTLIMGILNVTP-----GGSYNEVDAAVRHAKEMRDEGAHIIDIGGEST----AKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGKG-----
General information:
TITO was launched using:
RESULT:
Template:
3TYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156830 for 2173 contacts (-72.2/contact) +
2D Compatibility (PS) -28032 + (NN) -18464 + (LL) 1312
1D Compatibility (HY) -30800 + (ID) 8450
Total energy: -241264.0 ( -111.03 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_3TYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TYA-query.scw
PDB file :
Tito_Scwrl_3TYA.pdb
: