Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
4GKK Chain:L ((1-122))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPK--
General information:
TITO was launched using:
RESULT:
Template:
4GKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16169 for 802 contacts (-20.2/contact) +
2D Compatibility (PS) -13048 + (NN) -4850 + (LL) 864
1D Compatibility (HY) -10800 + (ID) 4650
Total energy: -48653.0 ( -60.66 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4GKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKK-query.scw
PDB file :
Tito_Scwrl_4GKK.pdb
: