Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG-----------------------------------------------------------------
3TNF Chain:B ((3-381))LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK


General information:
TITO was launched using:
RESULT:

Template: 3TNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3923 for 173 contacts (-22.7/contact) +
2D Compatibility (PS) -4255 + (NN) -1035 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 250
Total energy: -12263.0 ( -70.88 by residue)
QMean score : 0.631

(partial model without unconserved sides chains):
PDB file : Tito_3TNF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3TNF-query.scw
PDB file : Tito_Scwrl_3TNF.pdb: