Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG
5GAG Chain:K ((3-142))
---TFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI--
General information:
TITO was launched using:
RESULT:
Template:
5GAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48156 for 937 contacts (-51.4/contact) +
2D Compatibility (PS) -15334 + (NN) -9657 + (LL) 288
1D Compatibility (HY) -12800 + (ID) 4100
Total energy: -89759.0 ( -95.79 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_5GAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAG-query.scw
PDB file :
Tito_Scwrl_5GAG.pdb
: