Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSANLTDFVTKTIEEMNSFDRENMECIKKLIRKAIDFYHLKSYEEVEETHSGNVRFLHV----HSMMEENMLSKMIVVTRNGKTDLDIEGVYEGYVVREY
1WHR Chain:A ((164-235))
---EILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNVDQ----TG--KAVIINKTSNTRIPEQRFSEHIKDEKNT------------------
General information:
TITO was launched using:
RESULT:
Template:
1WHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13490 for 332 contacts (-40.6/contact) +
2D Compatibility (PS) -6849 + (NN) 2896 + (LL) 1924
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -17519.0 ( -52.77 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_1WHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WHR-query.scw
PDB file :
Tito_Scwrl_1WHR.pdb
: