Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVIGHDWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPLYPPQWLKSS----YIAYFQLPDIPEASLRENDYDTLDKAIGLSDRPAL------------------------FTSEDVSRYKEAWKQPGALTAMLNWYRALRKG------SLAEKPSYETVPYRMIWGMEDRFLSRKLAKETERHCPNGHLIFVDEASHWINHEKPAIVNQLILEYLKNQ
5AI9 Chain:A ((249-543))-------------VRLHFVELG--SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPL---ESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSG-FRGPLNWYRNMERNWKWACKSLGRKI---LIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWL---


General information:
TITO was launched using:
RESULT:

Template: 5AI9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1414 -165547 -117.08 -634.28
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -117.08
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.454

(partial model without unconserved sides chains):
PDB file : Tito_5AI9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AI9-query.scw
PDB file : Tito_Scwrl_5AI9.pdb: