Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
1TMX Chain:A ((6-51))
--------SAEQQAREQDLVERVLRSFDATADPRLKQVMQALTRHLHAFLREVR-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 538 for 225 contacts (2.4/contact) +
2D Compatibility (PS) -4758 + (NN) -538 + (LL) 3908
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -3350.0 ( -14.89 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1TMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMX-query.scw
PDB file :
Tito_Scwrl_1TMX.pdb
: