Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQT--RTVQQVRDLARDRGR----QMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP----PLDDLVGDDLVPYRT--LVTQAPVGVMVGHLQVPGLTGSEPASLSKAAV-NLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4GNV Chain:A ((68-271)) | ---------------------------------------------------------------------------------------------------------------------ILIAVDHEGGRVQRFRTDGFTVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVLDL-DYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGMANCGKHFPGHGFAEADSH---VALPTDDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVD----KRPAGFSRVWLQDILRGKLG-----FTGAIFSDDLSMEAA---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21710 for 1580 contacts (-13.7/contact) +
2D Compatibility (PS) -20844 + (NN) -13790 + (LL) 10740
1D Compatibility (HY) -13200 + (ID) 3850
Total energy: -62654.0 ( -39.65 by residue)
QMean score : 0.260
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