Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP--GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKSA |
2KM6 Chain:A ((3-98)) | ----------------------------MTSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEE-ADGKKLAEILVNTSSENWIRNATVNILEEMNLTEL-----------CKMAKAEMMEDGQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2959 for 668 contacts (-4.4/contact) +
2D Compatibility (PS) -9714 + (NN) 601 + (LL) 4372
1D Compatibility (HY) 0 + (ID) 600
Total energy: -8300.0 ( -12.43 by residue)
QMean score : 0.183
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