Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAA-AVAGQGRG
4EMB Chain:A ((29-270))
-----KLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKH--YYLGDESKIKKAMESVASQ---
General information:
TITO was launched using:
RESULT:
Template:
4EMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100475 for 1944 contacts (-51.7/contact) +
2D Compatibility (PS) -26394 + (NN) -17420 + (LL) -436
1D Compatibility (HY) -20800 + (ID) 6050
Total energy: -171575.0 ( -88.26 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4EMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EMB-query.scw
PDB file :
Tito_Scwrl_4EMB.pdb
: