Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCL-RERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ---GDFDKVVVNRRLESACAELVSLLVGTAPGSP
1LVG Chain:A ((5-185))
---------------------RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLY--GTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQAL--------
General information:
TITO was launched using:
RESULT:
Template:
1LVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84353 for 1357 contacts (-62.2/contact) +
2D Compatibility (PS) -19812 + (NN) -9155 + (LL) 112
1D Compatibility (HY) -10800 + (ID) 3950
Total energy: -127958.0 ( -94.29 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1LVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LVG-query.scw
PDB file :
Tito_Scwrl_1LVG.pdb
: