Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4Y8F Chain:A ((5-248))
--RTPIIAGNWKMHYTIDEAVKLVEELKPLVKDA---KCEVVVCPTFVCLDAVKKAVEGTNIKV--GAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASLVAADFAQI----------
General information:
TITO was launched using:
RESULT:
Template:
4Y8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162021 for 2073 contacts (-78.2/contact) +
2D Compatibility (PS) -27314 + (NN) -17811 + (LL) 764
1D Compatibility (HY) -21600 + (ID) 5250
Total energy: -233232.0 ( -112.51 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_4Y8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y8F-query.scw
PDB file :
Tito_Scwrl_4Y8F.pdb
: