Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSND-----WLNEHPGMAVMREQGIVVNDAV----NEQVAARMKVLAAPDLEVVALL-----------------SRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDD-----VTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEAT---KSWQESGFNVFSGG--------DLRRMGISAATVAALGQALSDPAAEVAVYARQ--YRDDAKGP--------SASVLSLKDGSGGRIALYQQ------ARTAGSGEAWLAICPATPQL------------VQVGVKTVLDTLPYGEWKTHSRV---------------------------------------- |
| 4L6Y Chain:A ((2-450)) | RRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQELKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQIILCMEELDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQ-LEMQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVELVQYWDQCFYSQEQRQAFAPFCAEYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQER |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11252 for 1515 contacts (-7.4/contact) +
2D Compatibility (PS) -31136 + (NN) -2184 + (LL) -172
1D Compatibility (HY) -7200 + (ID) 2150
Total energy: -54094.0 ( -35.71 by residue)
QMean score : -0.052
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