Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLPVQRHPRSLFPEFSELFAAFPSFAGLRPTFDTRLMRLEDEMKEGRYEVRAELPGVDPDKDVDIMVRDGQLTIKAER-----TEQKDFDGRSEFAYGSFVRTVSLPVGADEDDIKATYDKGILTVSVAVSEGKPTEKHIQIRSTN
1SHS Chain:A ((55-137))
---------------------------------------------------KVIAWLPGVNKE-DIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAE--------------
General information:
TITO was launched using:
RESULT:
Template:
1SHS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44313 for 429 contacts (-103.3/contact) +
2D Compatibility (PS) -8929 + (NN) -6142 + (LL) 4260
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -60274.0 ( -140.50 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1SHS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SHS-query.scw
PDB file :
Tito_Scwrl_1SHS.pdb
: