Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQSLAVKTFEDLFAELGDRA-RTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEHESNDALAEEISQLLYWTQVLMISRGLSLDDVYRKL
1YXB Chain:A ((4-90))
-------KTFEELFTELQHKAAN----TSRTAELVDKGVHAIGKKVVEEAAEVWMAAEYEGKDAAAEEISQLLYHVQVMMVARGISLDDVYAHL
General information:
TITO was launched using:
RESULT:
Template:
1YXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4948 for 451 contacts (-11.0/contact) +
2D Compatibility (PS) -8258 + (NN) -1015 + (LL) 1088
1D Compatibility (HY) -2800 + (ID) 1500
Total energy: -17433.0 ( -38.65 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1YXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXB-query.scw
PDB file :
Tito_Scwrl_1YXB.pdb
: