Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTSITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEGVGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
1KN3 Chain:A ((53-125))
-------------------------------------------------ISWDGL-DPGKLYTLILTDPDAPSRKKPVYREWHHFLVVNMKGN------------DISSGNV-------LSDYVGSGPPKGTGLHRYVWLVY---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39709 for 393 contacts (-101.0/contact) +
2D Compatibility (PS) -7532 + (NN) -7220 + (LL) 4788
1D Compatibility (HY) -6800 + (ID) 1150
Total energy: -57623.0 ( -146.62 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1KN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KN3-query.scw
PDB file :
Tito_Scwrl_1KN3.pdb
: