Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
2OKB Chain:A ((12-113))
----------------PTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLK-GIDI--GGGVIDEDYRGNIGVILIN-NGKCTFNVNTGDRIAQLIYQRIYYP--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57715 for 678 contacts (-85.1/contact) +
2D Compatibility (PS) -11105 + (NN) -5854 + (LL) 2056
1D Compatibility (HY) -10400 + (ID) 2300
Total energy: -85318.0 ( -125.84 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKB-query.scw
PDB file :
Tito_Scwrl_2OKB.pdb
: