Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAG--RGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRP-GCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKE--VTALDRSYRIDG-DELSYSLQMRAVGQPLQDHLAAVLHRQR
3IA8 Chain:A ((1-162))
-PPKMNPVVEPLSWMLGTWLSDPPGAGTYPTLQPFQYLEEVHISHVGQPMLNFSFNSFHPDTRKPMHRECGFIRLKPDTNKVAFVSAQNTGVVEVEEGEVNG--QELCIA--S---HSIARISFAKEPHVEQITRKFRLNSEGKLEQTVSMATTTQPMTQHLHVTYKKVT
General information:
TITO was launched using:
RESULT:
Template:
3IA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73240 for 1132 contacts (-64.7/contact) +
2D Compatibility (PS) -16606 + (NN) -7818 + (LL) 404
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -111010.0 ( -98.07 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3IA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IA8-query.scw
PDB file :
Tito_Scwrl_3IA8.pdb
: