Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPAPVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ-GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAERIERDG
3H2M Chain:A ((42-293))
-------IMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGES----FAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRD--------NMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLD------LPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIG--------
General information:
TITO was launched using:
RESULT:
Template:
3H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141888 for 2112 contacts (-67.2/contact) +
2D Compatibility (PS) -28042 + (NN) -20253 + (LL) 844
1D Compatibility (HY) -21600 + (ID) 5150
Total energy: -216089.0 ( -102.31 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H2M-query.scw
PDB file :
Tito_Scwrl_3H2M.pdb
: