Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVG--LVAGLVALTIGHLAVAAAALVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR-------------
1CLI Chain:A ((5-170))
TSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHD-TIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGIAEGCLQS----------GCSLVG---GETAEMPGMYHGEDYDVAGFCVGVVEKSEII
General information:
TITO was launched using:
RESULT:
Template:
1CLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44216 for 664 contacts (-66.6/contact) +
2D Compatibility (PS) -10201 + (NN) -2967 + (LL) 1072
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -62162.0 ( -93.62 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_1CLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CLI-query.scw
PDB file :
Tito_Scwrl_1CLI.pdb
: