Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIVGVLVAAATPIISSASATPANIAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTNSGYPEHTFTWETGLRLRAALNALG-VRTALSRGNDNALGPCVDERANMANALRPNAIVSLHADGGPA-SGRGFHVNYSAPPLNAIQ------------------AGPSVQFARIMRDQLQASG--------------IPK-ANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQGQAR |
| 3NE8 Chain:A ((3-229)) | ------------------------ASFRVVLDPGHGGID--------------------GGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFL--RLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKE------DILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHR-YADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42954 for 1444 contacts (-29.7/contact) +
2D Compatibility (PS) -21120 + (NN) -16304 + (LL) 2644
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -87234.0 ( -60.41 by residue)
QMean score : 0.446
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