Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAS-SPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKG-PARLVIARVMIPALIAS-----YVVSVLFQEAAFRGFSALLEFNTFVARISLASF-------LAYVLGQILDIQVFDRLRRSRH-WWTA---PVASTIL-GNLLDTFTFFFVAFWR------SDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA
3C7J Chain:A ((1-237))
-SNAMRKSDREAFLSSVLGNEQ---PPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEVETDFGQIGRLNRMFHLSLYAKTHNKRLMRLVEEGLNEEERFLRFNLSSMGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLN-RGVQAVTQYLQSQKAGNV
General information:
TITO was launched using:
RESULT:
Template:
3C7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199794 for 1452 contacts (-137.6/contact) +
2D Compatibility (PS) -21778 + (NN) -3941 + (LL) 576
1D Compatibility (HY) 3200 + (ID) 1250
Total energy: -222987.0 ( -153.57 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_3C7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C7J-query.scw
PDB file :
Tito_Scwrl_3C7J.pdb
: