Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQER--------EQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSV---RKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
2LCH Chain:A ((2-107))
-----------------GSHQEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKKKLDMVTRELDKKVSGSYLVPR---
General information:
TITO was launched using:
RESULT:
Template:
2LCH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23783 for 599 contacts (-39.7/contact) +
2D Compatibility (PS) -10469 + (NN) -6922 + (LL) 1060
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -43864.0 ( -73.23 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2LCH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LCH-query.scw
PDB file :
Tito_Scwrl_2LCH.pdb
: