Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHR-LIAG-AEPVEALLFHAGVEGMPVGLGERGEMPDA
3IBM Chain:A ((53-137))
----------------------------------------------APAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVV-LD-DRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMC
General information:
TITO was launched using:
RESULT:
Template:
3IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29121 for 543 contacts (-53.6/contact) +
2D Compatibility (PS) -8507 + (NN) 2579 + (LL) 1504
1D Compatibility (HY) -800 + (ID) 550
Total energy: -34895.0 ( -64.26 by residue)
QMean score : 0.188
(partial model without unconserved sides chains):
PDB file :
Tito_3IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IBM-query.scw
PDB file :
Tito_Scwrl_3IBM.pdb
: