Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKC--P--Y-QEVDGLD-----L---VGDTHHLMAWRDGQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSA---QAHLQAYYGRYGFVAVTEVYLEDDIPHIGMRRA
3FNC Chain:A ((4-145))
--MDFHI---RKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEK--GKSELAAFYLLPEVTQRGLGTELLEVGMTLFHV--P-LPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRF
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85847 for 859 contacts (-99.9/contact) +
2D Compatibility (PS) -13327 + (NN) -4062 + (LL) 736
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -108700.0 ( -126.54 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: