Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
4UQM Chain:A ((23-241))
---------LPEDWQEALLPEFSAPYFHELTDFLRQERKE-YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAAQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQLPAT
General information:
TITO was launched using:
RESULT:
Template:
4UQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87721 for 1825 contacts (-48.1/contact) +
2D Compatibility (PS) -23873 + (NN) -12426 + (LL) 240
1D Compatibility (HY) -22800 + (ID) 6200
Total energy: -152780.0 ( -83.72 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_4UQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQM-query.scw
PDB file :
Tito_Scwrl_4UQM.pdb
: