Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADETELKRLYWHSRRGMLELDVLLVPFVQEVYPGLDAEDQARFRKLLECEDQ-----DMFGWFMQRGEPEDADLRRMVRMILDRVQPD
1J2M Chain:A ((54-98))
-----------------------------------------VNIDELLELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLHK--
General information:
TITO was launched using:
RESULT:
Template:
1J2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6390 for 198 contacts (-32.3/contact) +
2D Compatibility (PS) -3806 + (NN) -640 + (LL) 3420
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -10116.0 ( -51.09 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1J2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J2M-query.scw
PDB file :
Tito_Scwrl_1J2M.pdb
: