Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRPILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLL-VAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDNPDVIKAYLGEA
4P33 Chain:A ((3-235))
-----LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD----------DLSAEQREDR-----ANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDQPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLG--
General information:
TITO was launched using:
RESULT:
Template:
4P33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148820 for 1885 contacts (-78.9/contact) +
2D Compatibility (PS) -25556 + (NN) -10365 + (LL) 1872
1D Compatibility (HY) -16800 + (ID) 3800
Total energy: -203469.0 ( -107.94 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_4P33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P33-query.scw
PDB file :
Tito_Scwrl_4P33.pdb
: