Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIAN----TRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATC---AAAYRD----ALPDSVEPEEGRR-----IEP-PRCP--ACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
2B4Y Chain:A ((14-270))
-----KFFAKAKHIVIISGAGVSAESGV--------GYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA-----
General information:
TITO was launched using:
RESULT:
Template:
2B4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134827 for 1830 contacts (-73.7/contact) +
2D Compatibility (PS) -25030 + (NN) -11664 + (LL) 1388
1D Compatibility (HY) -16800 + (ID) 5050
Total energy: -191983.0 ( -104.91 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2B4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B4Y-query.scw
PDB file :
Tito_Scwrl_2B4Y.pdb
: