Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLEFKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
2VLO Chain:A ((4-86))
-KHSISDYTEAEFLQLVTTICNADTS---SEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
General information:
TITO was launched using:
RESULT:
Template:
2VLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6449 for 542 contacts (-11.9/contact) +
2D Compatibility (PS) -9155 + (NN) -7985 + (LL) 264
1D Compatibility (HY) -7600 + (ID) 2150
Total energy: -33075.0 ( -61.02 by residue)
QMean score : 0.792
(partial model without unconserved sides chains):
PDB file :
Tito_2VLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLO-query.scw
PDB file :
Tito_Scwrl_2VLO.pdb
: