Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLAELFAVMAPVLFGAGVGYVWVRLGHAYPTEFVSRIVFNIGSPCLILATLAHTRVDLHSFGRMALASALICVCMAALGWAAARLGRQEWQVLVPAYSFPNVGNMGLPVCLYAFGEAGMTLAVAFYLIMSIGNFSLGVFWMSGERSWRSLLGNPILLSVLLALLLMGLDLQLPRWMANTVDLMAGLTIPLMLITLGVSLASIRPRQLGNGFF------YGGLRLLLGALVGWSVALALQLPPLAQGVLVVQSSMPVAVFNYLYALRGNRSPDQV-ASLVLCSTLLSFAFIPLLLTWWLPALR |
| 4NL7 Chain:A ((1-272)) | ---GVPEQEDSVLFRRGTG--------QSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKT-------TPKRKPAKKNKSQKKNTAASLQQWKVGDK----CSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNL-------SDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKP-GLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NL7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156207 for 1591 contacts (-98.2/contact) +
2D Compatibility (PS) -25882 + (NN) 15777 + (LL) 2932
1D Compatibility (HY) 12800 + (ID) 2150
Total energy: -152730.0 ( -96.00 by residue)
QMean score : -0.042
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