Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------MAFDAARYVHRYYASLAPAPGNEYPRLRAWEYLWEYVWDPSRSW-DDLTAPEQLDTTALHLGFYLANWGMFRGSSGLLQNSNLDL-----MKALARQLFSGAGPELFELSLVDF----AGNGAR-LAHNRK-----LLETVLGSMDALSSRVSWTDTLKS-------------KILLGVWGEFPALDRHYVAACRA--LYPRRGLTSVNGGTLTAL--------HRLIGEERLSFPRLETARKGLLYPTGRLADMAFFQYGLENA---------------------------------------- |
| 3H5N Chain:A ((4-350)) | MDYILGRYVKIARYGSGGLVGGGGKEQYVENLVLWENIIKTAYCFITPSSYTAALETANIPEKDFSNCFRFLKENFFIIPGEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSG--IGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKIHSQNMGRSPVCSVCG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3H5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71398 for 1528 contacts (-46.7/contact) +
2D Compatibility (PS) -23716 + (NN) -6391 + (LL) -36
1D Compatibility (HY) -400 + (ID) 1050
Total energy: -102991.0 ( -67.40 by residue)
QMean score : 0.160
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