Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MSIEIDSEQGVCSVEIE-GSRHRAPVD---SLRIGTDAEARLSVLYIDGKRLHISEEDAQRLVVAGA-EDQR--RHL-MADD
3K8R Chain:A ((24-108))
EPRAAKARYDRSSARVIVDLENGCTFAFPPRLAQGLEGASDDQLCAVEILGQGYGLHWETLD-VDLSLPGLMAGIFGTKAWMAKRA
General information:
TITO was launched using:
RESULT:
Template:
3K8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24424 for 420 contacts (-58.2/contact) +
2D Compatibility (PS) -7985 + (NN) -3406 + (LL) 144
1D Compatibility (HY) -800 + (ID) 650
Total energy: -37121.0 ( -88.38 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_3K8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8R-query.scw
PDB file :
Tito_Scwrl_3K8R.pdb
: