Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGMRTVLTGLAGMLLGSMMPVQADMPRPTGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWL---NQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEKVALSGEQAFQVAEQRRQRFRLERGSNAIAVGSERSADGKGMLLANPHFPW-NGAMRFYQMHLTIPGRLDVMGASLPGLPVVNIGFSRHLAWTHTVDTSSHFTLYRLALDPKDPRRYLVDGRSLPLEEKSVAIEVRGADGKLSRVEHKVYQSIYGPLVVWPGKLDWNRSEAYALRDANLENTRVLQQWYSINQASDVADLRRRVEALQGIPWVNTLAADEQGNALYMNQSVVPYLKPELIPACAIPQLVAEGLPALQGQDSRCAWSRDPAAAQAGITPAAQLPVLLRR--DFVQNSNDSAWLTNPASPL----QGFSPLVSQEKPIGPRARYALSRLQGKQPLEAKTLEEMVTANHVFSADQVLPDLLRLCRDNQGEKSLARACAALAQWDRGANLDSGSGFVYFQRFMQRFAELDGA----WKEPFDAQRPLDTPQGIALDRPQVATQVRQALADAAAEVEKSGIPDGARWGDLQVSTRGQERIAIPGGDGH-----FGVYNAIQSVRKGDHLEVVGGTSYIQLVTFPEEGPKARGLLAFSQSSDPRSPHYRDQTELFSRQQWQTLPFSDRQIDADPQLQRLSIRE |
| 3S8R Chain:A ((9-679)) | -------------------PIAAYKPR----SNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTT-----------VWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPDVRQ--VLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPP-------------DLADQ---------GANSWAVAPGKTANGNALLLQNPHLSWTTDYFTYYEAHLVTPD-FEIYGATQIGLPVIRFAFNQRMGITNTVNGMVGATNYRLTLQDGG---YLYDGQVRPFERPQASYRLRQADGTTVDKPLEIRSSVHGPV------FERADGTAVAVRVAGLDRPGMLEQYFDMITADSFDDYEAALARMQ-VPTFNIVYADREGTINYSFNGVAPKRAEGDI-------AFWQGL--VPGDSSRYLWTE--------THPLDDLPRVTNPPGGFVQNSNDPPW--TPTWPVTYTPKDFPSYLAPQTPHSLRAQQSVRLMSENDDLTLERFMALQLSHRAVMADRTLPDLIPAALIDP-DPEVQAAARLLAAWDREFTSDSRAALL-FEEWARLFAGQNFAGQAGFATPWSLDKPVSTPYGVR-DPKAAVDQLRTAIANTKRKYGAIDRPFG------DASRMILNDVNVPGAAGYGNLGSFRVFTWSDPDENGVRTPVHGET-WVAMIEF-STPVRAYGLMSYGNSRQPGTTHYSDQIERVSRADFRELLLRREQVEA----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3S8R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -194735 for 5911 contacts (-32.9/contact) +
2D Compatibility (PS) -69721 + (NN) -34370 + (LL) 6288
1D Compatibility (HY) -34800 + (ID) 9550
Total energy: -336888.0 ( -56.99 by residue)
QMean score : 0.450
|
|
|