Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRLKRDPLERAFLRGYQNGITGKSRDLCPFTHPTTRQSWLNGWREGRGDNWDGLTGTAGLQRLNQLQHV
1LOI Chain:? ((1-25))
-------------------------MPLVDFFCETCSKPWLVGWWDQFKR--------------------
General information:
TITO was launched using:
RESULT:
Template:
1LOI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1342 for 97 contacts (13.8/contact) +
2D Compatibility (PS) -2635 + (NN) -1632 + (LL) 2424
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -3251.0 ( -33.52 by residue)
QMean score : 0.042
(partial model without unconserved sides chains):
PDB file :
Tito_1LOI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LOI-query.scw
PDB file :
Tito_Scwrl_1LOI.pdb
: