Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
3FU1 Chain:B ((4-110))
---------------------------------GNKEKADQQKAVTDIVALENALDMYKLDNSVYPTTDQGLEALVTKPT-NPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDKGTIDVFTLGADGQEGGEGTGADIGNWN-
General information:
TITO was launched using:
RESULT:
Template:
3FU1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1388 for 762 contacts (-1.8/contact) +
2D Compatibility (PS) -11957 + (NN) -12736 + (LL) 3980
1D Compatibility (HY) -8000 + (ID) 3200
Total energy: -33301.0 ( -43.70 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3FU1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FU1-query.scw
PDB file :
Tito_Scwrl_3FU1.pdb
: