Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLFADAPLTLPDADLRYLPHWLDAPLASAWLLRLEQETPWEQPIL---RIHGEEHPTPRLVAWYGDPDAAYRYSGQVHRPLPWTALLGEIRERVEREVGQRVNGVLLNYYRDGQDSMGWHSDDEPELRRDPLVASLSLGGSRRFDLRRK--GQT---RIAHS-LELTHGSLLVMRGATQHHWQHQVAKTRRSCMPRLNLTFRLVYPQP
4MGT Chain:A ((31-202))
----------------------------------LEKEVEYFTGALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELA--SPIASVSFGASRDFVFRHKDS---PSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI----
General information:
TITO was launched using:
RESULT:
Template:
4MGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40333 for 1057 contacts (-38.2/contact) +
2D Compatibility (PS) -16302 + (NN) -3748 + (LL) 2476
1D Compatibility (HY) -10400 + (ID) 3350
Total energy: -71657.0 ( -67.79 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_4MGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MGT-query.scw
PDB file :
Tito_Scwrl_4MGT.pdb
: