Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVK-GALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
3UQI Chain:A ((3-107))
----VQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRV-----
General information:
TITO was launched using:
RESULT:
Template:
3UQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56931 for 778 contacts (-73.2/contact) +
2D Compatibility (PS) -10917 + (NN) 1862 + (LL) 328
1D Compatibility (HY) -8400 + (ID) 2200
Total energy: -76258.0 ( -98.02 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3UQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UQI-query.scw
PDB file :
Tito_Scwrl_3UQI.pdb
: