Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSAKNLKITFNPGTPIETRALRGLSLDIPAGQFVTVIGSNGAGKSTFLNAVSGDLPIDSGQILIDDEDVT-RKPVWARANRVARVFQDPMAGTCEDLTIEENMALAQRRGAGRGLGRAVQASMRDGFRESLATLGLGLENRLGDRIGLLSGGQRQAVSLLMAALQPSRILLLDEHTAALDPRTADFVLHLTARIVAEKKLTTMMVTHSMRQALDVGERTVMLHQGQVVLDVSGEQRKGLDVPDLLAMFEKVRGEKLADDALLLG
1XEF Chain:A ((2-234))
-ITFRNIRFRYKPDSPV---ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR-RQVGVVLQD---NVLLNRSIIDNISLAN---PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC---KGRTVIIIAARLSTVKNADRIIVMEKGKIV--EQGKHKELLSEPESLYSY----------------
General information:
TITO was launched using:
RESULT:
Template:
1XEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140571 for 1834 contacts (-76.6/contact) +
2D Compatibility (PS) -24841 + (NN) -7084 + (LL) 2384
1D Compatibility (HY) -16400 + (ID) 3100
Total energy: -189612.0 ( -103.39 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1XEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEF-query.scw
PDB file :
Tito_Scwrl_1XEF.pdb
: