Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MKAYDIEIVNDAAHAGEANHGWCFGLPPGIRPEQW--------PLDPDTGYPLMHGFTLLL-----------------------PEDYRVHGPEIVALSFFSLAPDQN-----DGGPTSVDGIREMLIDPPAQPPAEAELRPFWEAGRNSHPR---------LHRMEDILGGAYALILLDAAE--FSGAPCQPRALPAGNPLLAQTEPP----QWLEAGSAASFVPDWAEDDYYLLRALGGRPAAGHQQ------RYPLRWTARAQDPNAGVVPSEYGDGGYQLPHYWLDGKIERDNYREHPWVEGHLPNHIGGTMRPVQGV--PEMSPFYVEFEEYLGGYNFGGGNAQLDFRDMRFDWACG |
| 1OKE Chain:A ((1-394)) | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKI--TPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEP---GQLKLNWFKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6725 for 1952 contacts (-3.4/contact) +
2D Compatibility (PS) -30177 + (NN) -364 + (LL) 360
1D Compatibility (HY) -4400 + (ID) 2200
Total energy: -43506.0 ( -22.29 by residue)
QMean score : 0.125
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