Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MSRRLPFLLRCALFCGAGLLAATAQARMESLDDD----QLSDVVGQAFINLTTDAANGLNFTRINFGAD--IETQLNMKKLQLGQY---NRSGELAGSADIA--IDNFALGTVNDT-TGAINPFLISN-PYIEFAYDGSKMVGIRIGFGEAKGYLSGDIKTLTGNVPVDLYGTGSQLGGSISCGL--------LALDCLAAKTAITLTGSSQYTAQAELVNSSGNPDPIRAAMIGLKNGT-ALDMHDSTIIGSLVNVLLPFLTSNDCKLMGAQTCFNLAQYQSFPIGTVDPNNAQNFIDSSK-------GFFISMQSQNVQWRDQQDPSKLVAALAGAFLNMSRNADGTAPIKVDFGQAFNGIPRQDTCLGGLNKGC------------- |
| 4RAP Chain:A ((10-391)) | ITPPDTPTQAGPENIFYDFNDGARVLLPEGKWHVRLLDADSENILFCCDVDKGWVTSSKKYFVRFRIQVFRQGATPLLDETLKLKDRPVLISFPTGTLGDLLGWFPYAERFQSLHKCRLECTMSQDIIDLLAPQYPQIQFSTPDKPRTVAPYATYRVGLYFGGD----TNNQPVDFRKVGFHRSAGYILGVDPREAPVRLDLSAPRVIAAPYVCIATQSTCQAKYWNNGTGWSEVIAHLKSLGYRVMCID-RDAHYGQGFVWNHIPWGAEDFTGKLPLQERVNLLRHASFFIGL--PSGLSWLAWATRIPVVLISGFSLPNSEFYTPWRVFNSHG-----CYGCWDDTSLNFDHHDFL---WCPRHKNTDRQFECTRLITGAQVNGVINKLHRSLT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63501 for 2537 contacts (-25.0/contact) +
2D Compatibility (PS) -34290 + (NN) 1345 + (LL) 1720
1D Compatibility (HY) -8000 + (ID) 3250
Total energy: -105976.0 ( -41.77 by residue)
QMean score : 0.135
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