Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGK--TKASEFASLERIEFRLAPLPLLWQTI--RIPQIKLTQPRAELLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYV-FGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVH----SDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEK--LDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR |
| 3W36 Chain:A ((58-527)) | -----------------------------------------------IEFDLDKDNYIKWAQPTDENAGQ--------SPTLAILGPMDVTVFLWINRVVWLAAFDALAPYHETAVGVYSQIPRRPSSESATNRNLNIAALHAQHGVWKRVLP----QQVDQLRELMTALGLDPSDETEN--------------LSSPVGIGNVAAKNAFNALKNDGMNFLGYEGRKYNPRPWADYTGYEPVNTAFKVNNPSR---WQPQLQAHNARRA--------------------------------GGGPGDLGIYVTQHFVTPQTARTKAHIFRDPSRF----------------RIPRPEFSDHTNTRAYK-RSVDEIIDASANLN-----------DERKALAEIMENKLW-----GIGHSSIVIANKYDQNNEMGVHG-WCHWMLAHVLATFEPLIAAWHHKTRFDAVR------------------------------PVTAIRHVYG--------NRKIRAWGG-------------VGMGTVDIRASEWSSYLPV----GDHPEYPSGSTSLCSATSQAARRYFDSD------ELDWTINYPAGSTVVEPGITPGKDLSIHIPTWTDFTRTCATSRVWGGVHFQTTVDR---TIDFGEQFGDLAHEFVQRHVKG------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W36.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 40671 for 3949 contacts (10.3/contact) +
2D Compatibility (PS) -47177 + (NN) -1984 + (LL) 13724
1D Compatibility (HY) -8400 + (ID) 4050
Total energy: -7216.0 ( -1.83 by residue)
QMean score : 0.164
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