Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGAATAAILEAYGL-DVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAAD-WPEIGRLPLFVPSPRVAEMARELGAQRVIDCRGASAPALLAALTSAA
3MW8 Chain:A ((1-239))
--GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQA---QLDELSRADILIFISTSAVSFATPWLKDQW---PKATYYAVGDATADALALQGITAERSP---QATEGLLTLPSLEQ---VSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAANQAAVLDALG---
General information:
TITO was launched using:
RESULT:
Template:
3MW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183309 for 1829 contacts (-100.2/contact) +
2D Compatibility (PS) -25538 + (NN) -9709 + (LL) 852
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -238504.0 ( -130.40 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3MW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MW8-query.scw
PDB file :
Tito_Scwrl_3MW8.pdb
: