Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKILIVNSIYYTEIANLLLEGATDKLKGSNASYNVIEVPGAFEIPAAILFAVK-----SKHFNYDGYLALGCVIRGETDHYQYICKGVIKGLNEVVMHNTVPLGMGVITADSKDKALVRADKDKKNIGGRTASAVLHMIDLYNKLR
2I0F Chain:A ((12-156))
APHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGG--TEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKKFG
General information:
TITO was launched using:
RESULT:
Template:
2I0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110114 for 1176 contacts (-93.6/contact) +
2D Compatibility (PS) -14995 + (NN) -7233 + (LL) 108
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -146934.0 ( -124.94 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2I0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I0F-query.scw
PDB file :
Tito_Scwrl_2I0F.pdb
: