Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAICGGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPNYNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGRTGVKKSISHTLREVELKIVGEKAC-KIFRHYKDSLQICVGSSTKVASVYMGDSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE
1KYN Chain:B ((1-223))
--------------------IIGGRESRPHSRPYMAYLQIQSPAGQ-SRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR--
General information:
TITO was launched using:
RESULT:
Template:
1KYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182007 for 1931 contacts (-94.3/contact) +
2D Compatibility (PS) -24318 + (NN) -13023 + (LL) 2596
1D Compatibility (HY) -15200 + (ID) 5350
Total energy: -237302.0 ( -122.89 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1KYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KYN-query.scw
PDB file :
Tito_Scwrl_1KYN.pdb
: