Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQ-KPVCLVVAM-TPKRGIGINNGLPWPHLTTDFKHFSRVTKTTPEEASRLNGWLPRKFAKTGDSGLPSPSVGKRFNAVVMGRKTWESMPRKFRPLVDRLNIVVSSSLKEEDIAAEKPQAEGQQRVRVCASLPAALSLLEEE--YKDSVDQIFVVGGAGLYEAALSLGVASHLYITRVAR-----EFPCDVFFPAFPGDDILSNKSTAAQAAAP---AESVFVPFCPE--LGREKDNEATY-RPIFISKTFSDNGVPYDFVVLEK
3CSE Chain:A ((3-216))
--KVPVVGIVAALLPEMGIGFQGNLPW-RLAKEMKYFREVTTLTNDN--------------------------SKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGEL-----R--KVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQK----------QELEQRFYDNSDKLVDFLPSSIQLEGRLT---SQEWNGELVKGLPVQEKGYQFYFTLYTK
General information:
TITO was launched using:
RESULT:
Template:
3CSE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115241 for 1499 contacts (-76.9/contact) +
2D Compatibility (PS) -21335 + (NN) -5465 + (LL) 1472
1D Compatibility (HY) -15600 + (ID) 3000
Total energy: -159169.0 ( -106.18 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_3CSE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CSE-query.scw
PDB file :
Tito_Scwrl_3CSE.pdb
: